Michael Seringhaus
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WRITING

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JUMP TO opinion & commentary - peer-reviewed articles - reviews - science news - book reviews - fiction - comics - fun stuff

 

OPINION & COMMENTARY(looking for my column?)

Law Schools Shouldn't Grub For Rankings by Michael Seringhaus. The Hartford Courant. Page A9. April 2, 2008.
Carried on the Los Angeles Times-Washington Post newswire.
Accompanying interview on the Wall Street Journal Law Blog, April 2 2008
Discussed on Above The Law and TaxProf Blog, April 2 2008
Reprinted in the Deseret Morning News (Salt Lake City UT) and the Spokesman-Review (Spokane WA), April 6 2008

 

Manually structured digital abstracts: A scaffold for automatic text mining by Michael Seringhaus and Mark Gerstein. FEBS Letters. 2008 Mar 6; 582(8):1170.
[pubmed] [pre-print]

 

Uncovering trends in gene naming by Michael Seringhaus, Philip Cayting and Mark Gerstein. Genome Biology. 2008 Jan 31;9(1):401.
[pubmed] [full text] [PDF]

 

Structured digital abstract makes text mining easy by Mark Gerstein, Michael Seringhaus and Stan Fields. Nature. 2007 May 10;447(7141):142.
[pubmed] [full text] [PDF]

 

Publishing perishing? Towards tomorrow's information architecture by Michael Seringhaus and Mark Gerstein. BMC Bioinformatics. 2007 Jan 19; 8(1):17.
[pubmed] [abstract] [free full text] [PDF] open access

 

Chemistry Nobel Rich in Structure by Michael Seringhaus and Mark Gerstein. Science. Vol. 315. no. 5808, pp. 40-41 (5 January 2007).
[full text]

 

The Death of the Scientific Paper by Michael Seringhaus and Mark Gerstein. The Scientist. Volume 20, Issue 9, Page 25 (September 2006).
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Open Access Revisited by Michael Seringhaus. The New Criterion. Volume 23 (Summer 2005).
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Open Access: The Quiet Revolution in Scientific Publishing by Michael Seringhaus. B Magazine (Yale BBS). November, 2004.
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Scientists, consider where you publish by Michael Seringhaus. Yale Daily News. September 8, 2004.
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Reprinted in Neurobiology of Lipids 3:10, November 2, 2004. [PDF] open access

 

What Price Knowledge? by Michael Seringhaus. The New Criterion. Volume 22 (Summer 2004).
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PEER-REVIEWED ARTICLES

AR Borneman, TA Gianoulis, ZD Zhang, H Yu, J Rozowsky, M Seringhaus, LY Wang, M Gerstein, M Snyder. Divergence of transcription factor binding sites across related yeast species. Science. 2007 Aug 10;317(5839):815-9.
[pubmed] [full text] [PDF]

 

AR Borneman, ZD Zhang, J Rozowsky, M Seringhaus, M Gerstein, M Snyder. Transcription factor binding site identification in yeast: a comparison of high-density oligonucleotide and PCR-based microarray platforms. Funct Integr Genomics. 2007 Oct;7(4):335-45. Epub 2007 Jul 19.
[pubmed] [full text] [PDF]

 

ENCODE Project Consortium. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.
Nature. 2007 Jun 14;447(7146):799-816.
[pubmed] [full text] [free full text @ PMC] [PDF]

 

T Srikantha, AR Borneman, KJ Daniels, C Pujol, W Wu, M Seringhaus, M Gerstein, S Yi, M Snyder, DR Soll. TOS9 Regulates White-Opaque Switching in Candida albicans. Eukaryotic Cell. 2006 Oct;5(10):1674-87. Epub 2006 Sep 1.
[pubmed] [abstract] [full text] [PDF]

 

M Seringhaus, A Paccanaro, A Borneman, M Snyder, M Gerstein. Predicting Essential Genes in Fungal Genomes. Genome Research. 16:1126-1135, 2006.
[pubmed] [abstract] [free full text] [PDF] open access

 

M Seringhaus, A Kumar, J Hartigan, M Snyder, M Gerstein. Genomic analysis of insertion behavior and target specificity of mini-Tn7 and Tn3 transposons in Saccharomyces cerevisiae. Nucleic Acids Research 2006 34(8):e57: 1-12.
[pubmed] [abstract] [free full text] [PDF] open access

 

A Kumar, M Seringhaus, MC Biery, RJ Sarnovsky, L Umansky, S Piccirillo, M Heidtman, KH Cheung, CJ Dobry, MB Gerstein, NL Craig, M Snyder. Large-Scale Mutagenesis of the Yeast Genome Using a Tn7-Derived Multipurpose Transposon. Genome Research. 2004;14: 1975-1986.
[pubmed] [abstract] [PDF]

 

Y Xia, H Yu, R Jansen, M Seringhaus, S Baxter, D Greenbaum, H Zhao, M Gerstein. Analyzing cellular biochemistry in terms of molecular networks. Annual Reviews of Biochemistry. 2004;73:1051-87.
[pubmed] [abstract] [full text] [PDF]

 

KH Cheung, D Pan, A Smith, M Seringhaus, SM Douglas, M Gerstein. An XML-Based Approach to Integrating Heterogeneous Yeast Genome Data (2004) 2004 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences.

 

 

REVIEWS

CE Mason, M Seringhaus, C Sattler de Sousa e Brito. Personalized genomic medicine on a patchwork, partially-owned genome. Yale Journal of Biology and Medicine. Dec 2007, (in press).
[pubmed] [full text] [PDF] open access

 

 

SCIENCE NEWS

Essentially Conserved: Understanding Essential Genes. Drug Discovery Today, 9;1:45. January 2004.

 

 

BOOK REVIEWS

Developing Bioinformatics Computer Skills (Gibas & Jambeck 2001) Yale Journal of Biology and Medicine, 2002; 75:2
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Beginning Perl for Bioinformatics (Tisdall 2001) Yale Journal of Biology and Medicine, 2002; 75:4
[PDF]

 

 

A Dictionary of Genetics (6th Ed., King & Stansfield 2002) Yale Journal of Biology and Medicine, 2002; 75:4
[PDF]

 

 

Operators and Promoters: The Story of Molecular Biology and its Creators (Echols 2001) Yale Journal of Biology and Medicine, 2002; 75:5

 

 

FICTION

Winston Price Stories

 

The Curious Matter of the Crawling Ruby Vine. (2006)

 

The Affair of the Ashen Tycoon. In Posse Review, (2003).
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The Case of the Wayward Brougham. Trinity Review, University of Toronto (Fall 1999)

 

 

The Adventure of the Half-Witted Shopkeep. The Jupiter (February 1999)

 

 

The Case of the Barthoff Diamond. The Jupiter (February 1999)

 

 

COMICS

YTR - ya thats rite appeared weekly in The Yale Herald, January-May 2005.
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FUN STUFF

Lyse, Lyse Baby. (My cover of Vanilla Ice's "Ice, Ice Baby")
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Sex Advice from Scientists. (Interview for Nerve.com, April 2006)
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© 2002-2008