| JUMP TO opinion & commentary - peer-reviewed articles - reviews - science news - book reviews - fiction - comics - fun stuff
OPINION
& COMMENTARY(looking
for my column?)
 |
Law Schools Shouldn't Grub For Rankings by Michael Seringhaus. The Hartford Courant. Page A9. April 2, 2008.
Carried on the Los Angeles Times-Washington Post newswire.
Accompanying interview on the Wall Street Journal Law Blog, April 2 2008
Discussed on Above The Law and TaxProf Blog, April 2 2008
Reprinted in the Deseret Morning News (Salt Lake City UT) and the Spokesman-Review (Spokane WA), April 6 2008
|
|
Manually structured digital abstracts: A scaffold for automatic text mining by Michael Seringhaus and Mark Gerstein. FEBS Letters. 2008 Mar 6; 582(8):1170.
[pubmed] [pre-print]
|
|
Uncovering trends in gene naming by Michael Seringhaus, Philip Cayting and Mark Gerstein. Genome Biology. 2008 Jan 31;9(1):401.
[pubmed] [full text] [PDF]
|
|
Structured digital abstract makes text mining easy by Mark Gerstein, Michael Seringhaus and Stan Fields. Nature. 2007 May 10;447(7141):142.
[pubmed] [full text] [PDF]
|
|
Publishing
perishing? Towards tomorrow's information architecture by Michael Seringhaus and Mark Gerstein. BMC Bioinformatics. 2007 Jan 19; 8(1):17.
[pubmed] [abstract]
[free full text] [PDF] open
access
|
|
Chemistry
Nobel Rich in Structure by Michael Seringhaus and
Mark Gerstein. Science. Vol. 315. no. 5808, pp.
40-41 (5 January 2007).
[full text]
|
|
The
Death of the Scientific Paper by Michael Seringhaus
and Mark Gerstein. The Scientist. Volume 20, Issue
9, Page 25 (September 2006).
[HTML]
|
|
Open
Access Revisited by Michael Seringhaus. The
New Criterion. Volume 23 (Summer 2005).
[HTML]
|
|
Open
Access: The Quiet Revolution in Scientific Publishing
by Michael Seringhaus. B Magazine (Yale BBS). November,
2004.
[PDF]
|
|
Scientists,
consider where you publish by Michael Seringhaus.
Yale Daily News. September 8, 2004.
[HTML]
Reprinted
in Neurobiology of Lipids 3:10, November
2, 2004. [PDF] open access
|
|
What
Price Knowledge? by Michael Seringhaus. The
New Criterion. Volume 22 (Summer 2004).
[HTML]
|
PEER-REVIEWED ARTICLES
|
AR Borneman, TA Gianoulis, ZD Zhang, H Yu, J Rozowsky, M Seringhaus, LY Wang, M Gerstein, M Snyder. Divergence of transcription factor binding sites across related yeast species. Science. 2007 Aug 10;317(5839):815-9.
[pubmed] [full text] [PDF]
|
|
AR Borneman, ZD Zhang, J Rozowsky, M Seringhaus, M Gerstein, M Snyder. Transcription factor binding site identification in yeast: a comparison of high-density oligonucleotide and PCR-based microarray platforms. Funct Integr Genomics. 2007 Oct;7(4):335-45. Epub 2007 Jul 19.
[pubmed] [full text] [PDF]
|
|
ENCODE Project Consortium. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.
Nature. 2007 Jun 14;447(7146):799-816.
[pubmed] [full text] [free full text @ PMC] [PDF]
|
|
T Srikantha, AR Borneman, KJ Daniels, C Pujol, W Wu,
M Seringhaus, M Gerstein, S Yi, M Snyder,
DR Soll. TOS9 Regulates White-Opaque Switching in Candida
albicans. Eukaryotic Cell. 2006 Oct;5(10):1674-87. Epub 2006 Sep 1.
[pubmed]
[abstract]
[full text] [PDF]
|
|
M Seringhaus, A Paccanaro, A Borneman,
M Snyder, M Gerstein. Predicting Essential Genes in Fungal
Genomes. Genome Research. 16:1126-1135, 2006.
[pubmed]
[abstract]
[free
full text] [PDF] open access
|
|
M Seringhaus, A Kumar, J Hartigan, M
Snyder, M Gerstein. Genomic analysis of insertion behavior
and target specificity of mini-Tn7 and Tn3 transposons in
Saccharomyces cerevisiae. Nucleic Acids
Research 2006 34(8):e57: 1-12.
[pubmed]
[abstract]
[free
full text] [PDF] open access
|
|
A Kumar, M Seringhaus, MC Biery, RJ
Sarnovsky, L Umansky, S Piccirillo, M Heidtman, KH Cheung,
CJ Dobry, MB Gerstein, NL Craig, M Snyder. Large-Scale
Mutagenesis of the Yeast Genome Using a Tn7-Derived Multipurpose
Transposon. Genome Research. 2004;14: 1975-1986.
[pubmed]
[abstract] [PDF]
|
|
Y Xia, H Yu, R Jansen, M Seringhaus,
S Baxter, D Greenbaum, H Zhao, M Gerstein. Analyzing
cellular biochemistry in terms of molecular networks.
Annual Reviews of Biochemistry. 2004;73:1051-87.
[pubmed]
[abstract] [full text] [PDF]
|
|
KH Cheung, D Pan, A Smith, M Seringhaus,
SM Douglas, M Gerstein. An XML-Based Approach to Integrating
Heterogeneous Yeast Genome Data (2004) 2004 International
Conference on Mathematics and Engineering Techniques in
Medicine and Biological Sciences.
|
REVIEWS
|
CE Mason, M Seringhaus, C Sattler de Sousa e Brito. Personalized genomic medicine on a patchwork, partially-owned genome. Yale Journal of Biology and Medicine. Dec 2007, (in press).
[pubmed] [full text] [PDF] open access
|
SCIENCE NEWS
|
Essentially Conserved: Understanding
Essential Genes. Drug Discovery Today, 9;1:45.
January 2004. |
BOOK REVIEWS
|
Developing Bioinformatics Computer Skills (Gibas
& Jambeck 2001) – Yale Journal of Biology and Medicine,
2002; 75:2
[PDF]
|
| |
Beginning Perl for Bioinformatics (Tisdall 2001)
– Yale Journal of Biology and Medicine, 2002; 75:4
[PDF]
|
| |
A Dictionary of Genetics (6th Ed., King &
Stansfield 2002) – Yale Journal of Biology and Medicine,
2002; 75:4
[PDF]
|
| |
Operators and Promoters: The Story of Molecular Biology
and its Creators (Echols 2001) – Yale Journal of Biology
and Medicine, 2002; 75:5
|
FICTION
Winston
Price Stories
|
|
The Curious Matter of the Crawling Ruby Vine.
(2006)
|
|
The Affair of the Ashen Tycoon. In Posse Review,
(2003).
[HTML]
|
| |
The Case of the Wayward Brougham. Trinity
Review, University of Toronto (Fall 1999)
|
| |
The Adventure of the Half-Witted Shopkeep. The
Jupiter (February 1999)
|
| |
The Case of the Barthoff Diamond. The Jupiter
(February 1999)
|
COMICS
FUN STUFF
|
 |
